SNRPD1 protein (Pteropus vampyrus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Pteropus vampyrus

NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLNS1A	ENSPVAP00000001964	ENSPVAP00000012493	ENSPVAP00000001964	Chloride nucleotide-sensitive channel 1A.	annotation not available	0.994
CLNS1A	LSM3	ENSPVAP00000012493	ENSPVAP00000015844	Chloride nucleotide-sensitive channel 1A.	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.992
CLNS1A	SNRPB	ENSPVAP00000012493	ENSPVAP00000016049	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein polypeptides B and B1.	0.508
CLNS1A	SNRPD1	ENSPVAP00000012493	ENSPVAP00000005215	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein D1 polypeptide.	0.997
CLNS1A	SNRPD2	ENSPVAP00000012493	ENSPVAP00000001264	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein D2 polypeptide.	0.997
CLNS1A	SNRPD3	ENSPVAP00000012493	ENSPVAP00000010754	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein D3 polypeptide.	0.996
CLNS1A	SNRPF	ENSPVAP00000012493	ENSPVAP00000008523	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein polypeptide F.	0.994
CLNS1A	SNRPG	ENSPVAP00000012493	ENSPVAP00000004595	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein polypeptide G.	0.979
ENSPVAP00000001964	CLNS1A	ENSPVAP00000001964	ENSPVAP00000012493	annotation not available	Chloride nucleotide-sensitive channel 1A.	0.994
ENSPVAP00000001964	LSM3	ENSPVAP00000001964	ENSPVAP00000015844	annotation not available	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSPVAP00000001964	SF3A2	ENSPVAP00000001964	ENSPVAP00000012544	annotation not available	Splicing factor 3a subunit 2.	0.996
ENSPVAP00000001964	SNRNP70	ENSPVAP00000001964	ENSPVAP00000009024	annotation not available	Small nuclear ribonucleoprotein U1 subunit 70.	0.998
ENSPVAP00000001964	SNRPB	ENSPVAP00000001964	ENSPVAP00000016049	annotation not available	Small nuclear ribonucleoprotein polypeptides B and B1.	0.988
ENSPVAP00000001964	SNRPD1	ENSPVAP00000001964	ENSPVAP00000005215	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.999
ENSPVAP00000001964	SNRPD2	ENSPVAP00000001964	ENSPVAP00000001264	annotation not available	Small nuclear ribonucleoprotein D2 polypeptide.	0.999
ENSPVAP00000001964	SNRPD3	ENSPVAP00000001964	ENSPVAP00000010754	annotation not available	Small nuclear ribonucleoprotein D3 polypeptide.	0.999
ENSPVAP00000001964	SNRPF	ENSPVAP00000001964	ENSPVAP00000008523	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.999
ENSPVAP00000001964	SNRPG	ENSPVAP00000001964	ENSPVAP00000004595	annotation not available	Small nuclear ribonucleoprotein polypeptide G.	0.999
LSM3	CLNS1A	ENSPVAP00000015844	ENSPVAP00000012493	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	Chloride nucleotide-sensitive channel 1A.	0.992
LSM3	ENSPVAP00000001964	ENSPVAP00000015844	ENSPVAP00000001964	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	annotation not available	0.999