STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF38Ring finger protein 38. (495 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
    
 0.999
UBE2K
Ubiquitin conjugating enzyme E2 K.
    
 0.999
ENSPVAP00000015543
annotation not available
    
 0.999
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.999
ENSPVAP00000006746
annotation not available
      
 0.711
UBE2D3
Ubiquitin conjugating enzyme E2 D3.
    
 0.695
ENSPVAP00000012950
annotation not available
    
 0.695
UBE2D2
Ubiquitin conjugating enzyme E2 D2.
    
 0.695
SMAD7
SMAD family member 7.
   
 0.688
SMAD6
SMAD family member 6.
   
 0.683
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.