STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH1alkB homolog 1, histone H2A dioxygenase. (389 aa)    
Predicted Functional Partners:
ALKBH2
alkB homolog 2, alpha-ketoglutarate dependent dioxygenase.
      
 0.803
METTL4
Methyltransferase like 4.
   
  
 0.785
FTO
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.782
N6AMT1
N-6 adenine-specific DNA methyltransferase 1.
      
 0.775
NSUN3
NOP2/Sun RNA methyltransferase 3.
      
 0.716
TRMT61B
tRNA methyltransferase 61B.
     
 0.691
TRMT6
tRNA methyltransferase 6.
   
  
 0.672
ALKBH4
alkB homolog 4, lysine demethylase.
      
 0.643
TRMT10C
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
      
 0.614
FANCC
FA complementation group C.
      
 0.568
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.