STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF40Ring finger protein 40. (1002 aa)    
Predicted Functional Partners:
RNF20
Ring finger protein 20.
  
0.998
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.949
WAC
WW domain containing adaptor with coiled-coil.
   
 0.945
UBE2A
Ubiquitin conjugating enzyme E2 A.
    
 0.932
UBE2B
Ubiquitin conjugating enzyme E2 B.
    
 0.932
ENSPVAP00000006590
annotation not available
    
 0.874
CDC73
Cell division cycle 73.
   
 0.864
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.857
COMMD4
COMM domain containing 4.
   
 
 0.813
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.798
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.