STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN13Calpain 13. (666 aa)    
Predicted Functional Partners:
CAPNS1
Calpain small subunit 1.
   
0.859
CAST
Calpastatin.
   
 0.840
YPEL5
Yippee like 5.
      
 0.773
ARHGAP4
Rho GTPase activating protein 4.
      
 0.769
LCLAT1
Lysocardiolipin acyltransferase 1.
      
 0.769
YIPF6
Yip1 domain family member 6.
      
 0.769
ZNF106
Zinc finger protein 106.
    
 
 0.669
PEF1
penta-EF-hand domain containing 1.
   
 0.647
GCA
Grancalcin.
   
0.642
SRI
Sorcin.
   
0.642
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.