STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCOLCEProcollagen C-endopeptidase enhancer. (447 aa)    
Predicted Functional Partners:
TLL2
Tolloid like 2.
    
0.959
COL3A1
Collagen type III alpha 1 chain.
   
 0.942
COL1A2
Collagen type I alpha 2 chain.
   
 0.861
COL1A1
Collagen type I alpha 1 chain.
   
 0.822
ENSPVAP00000003595
annotation not available
   
 0.779
COL5A2
Collagen type V alpha 2 chain.
   
 0.779
ENSPVAP00000005982
annotation not available
   
 0.779
PID1
Phosphotyrosine interaction domain containing 1.
    
 
 0.740
CBLIF
Cobalamin binding intrinsic factor.
    
 0.731
TCN1
Transcobalamin 1.
    
 0.731
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.