STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX4LIM homeobox 4. (251 aa)    
Predicted Functional Partners:
ISL1
ISL LIM homeobox 1.
    
0.865
ISL2
ISL LIM homeobox 2.
    
0.865
LDB1
LIM domain binding 1.
    
 0.795
ALX3
ALX homeobox 3.
    
0.793
LDB2
LIM domain binding 2.
    
 0.718
POU1F1
POU class 1 homeobox 1.
   
 
 0.648
ISOC1
Isochorismatase domain containing 1.
      
 0.629
ZBTB34
Zinc finger and BTB domain containing 34.
   
 
 0.594
ORC6
Origin recognition complex subunit 6.
    
   0.590
SSBP2
Single stranded DNA binding protein 2.
    
 
 0.586
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.