STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM28Tripartite motif containing 28. (844 aa)    
Predicted Functional Partners:
SMARCAD1
annotation not available
   
 
 0.944
CBX5
Chromobox 5.
    
 0.934
ENSPVAP00000013707
annotation not available
    
 0.929
ZNF746
Zinc finger protein 746.
    
 0.912
ZNF282
Zinc finger protein 282.
    
 0.895
CBX1
Chromobox 1.
    
 0.889
ENSPVAP00000005952
annotation not available
    
 0.876
ZNF274
Zinc finger protein 274.
    
 0.856
SMAD4
SMAD family member 4.
   
 0.851
SETDB1
SET domain bifurcated histone lysine methyltransferase 1.
    
 
 0.842
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.