STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40Bpre-mRNA processing factor 40 homolog B. (866 aa)    
Predicted Functional Partners:
CDC5L
Cell division cycle 5 like.
   
 
 0.972
RBM25
RNA binding motif protein 25.
   
 
 0.968
U2AF2
U2 small nuclear RNA auxiliary factor 2.
    
 
 0.936
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
    
 
 0.920
SF1
Splicing factor 1.
    
 
 0.916
SF3B3
Splicing factor 3b subunit 3.
    
 
 0.887
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
     
 0.887
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
   0.885
PRPF40A
pre-mRNA processing factor 40 homolog A.
  
 
 
0.878
ENSPVAP00000001964
annotation not available
    
 
 0.872
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.