STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL25A1Collagen type XXV alpha 1 chain. (643 aa)    
Predicted Functional Partners:
COL26A1
Collagen type XXVI alpha 1 chain.
     
 0.897
PCSK4
Proprotein convertase subtilisin/kexin type 4.
    
 0.881
ENSPVAP00000014780
annotation not available
    
 0.881
COL21A1
Collagen type XXI alpha 1 chain.
  
  
0.727
EMID1
EMI domain containing 1.
  
  
0.680
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.656
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.656
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.656
COL6A2
Collagen type VI alpha 2 chain.
  
0.620
LEMD1
LEM domain containing 1.
      
 0.619
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.