STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG5SMG5 nonsense mediated mRNA decay factor. (1016 aa)    
Predicted Functional Partners:
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.996
UPF1
UPF1 RNA helicase and ATPase.
   
 0.994
SMG7
SMG7 nonsense mediated mRNA decay factor.
   
0.993
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
0.978
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.967
PABPC1
poly(A) binding protein cytoplasmic 1.
    
 0.961
EIF4G1
Eukaryotic translation initiation factor 4 gamma 1.
   
 0.914
PAIP1
poly(A) binding protein interacting protein 1.
   
 0.914
SMG9
SMG9 nonsense mediated mRNA decay factor.
   
 
 0.904
ENSPVAP00000002753
annotation not available
    
 0.884
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.