STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF4Ring finger protein 4. (169 aa)    
Predicted Functional Partners:
SUMO3
Small ubiquitin like modifier 3.
    
 
 0.956
ENSPVAP00000012950
annotation not available
   
 0.946
SUMO1
Small ubiquitin like modifier 1.
    
 
 0.935
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.922
ENSPVAP00000015543
annotation not available
    
  0.921
UBB
Ubiquitin B.
    
  0.910
KXD1
KxDL motif containing 1.
    
   0.862
UBE2V2
Ubiquitin conjugating enzyme E2 V2.
    
 0.826
PML
Promyelocytic leukemia.
    
 
 0.791
MDC1
Mediator of DNA damage checkpoint 1.
    
 0.791
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.