KHDRBS3 protein (Pteropus vampyrus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KHDRBS3

KH RNA binding domain containing, signal transduction associated 3. (315 aa)

Predicted Functional Partners:

NSRP1

0.776

LRRC7

0.770

YBX3

0.758

KHDRBS1

0.755

PTK6

0.741

SRMS

0.741

FYN

0.741

METTL21C

0.722

HNRNPK

0.709

RPRD2

0.694

Your Current Organism:

Pteropus vampyrus

NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FYN	KHDRBS1	ENSPVAP00000011288	ENSPVAP00000012534	FYN proto-oncogene, Src family tyrosine kinase.	KH RNA binding domain containing, signal transduction associated 1.	0.920
FYN	KHDRBS3	ENSPVAP00000011288	ENSPVAP00000016055	FYN proto-oncogene, Src family tyrosine kinase.	KH RNA binding domain containing, signal transduction associated 3.	0.741
HNRNPK	KHDRBS1	ENSPVAP00000008564	ENSPVAP00000012534	Heterogeneous nuclear ribonucleoprotein K.	KH RNA binding domain containing, signal transduction associated 1.	0.856
HNRNPK	KHDRBS3	ENSPVAP00000008564	ENSPVAP00000016055	Heterogeneous nuclear ribonucleoprotein K.	KH RNA binding domain containing, signal transduction associated 3.	0.709
HNRNPK	YBX3	ENSPVAP00000008564	ENSPVAP00000006361	Heterogeneous nuclear ribonucleoprotein K.	Y-box binding protein 3.	0.696
KHDRBS1	FYN	ENSPVAP00000012534	ENSPVAP00000011288	KH RNA binding domain containing, signal transduction associated 1.	FYN proto-oncogene, Src family tyrosine kinase.	0.920
KHDRBS1	HNRNPK	ENSPVAP00000012534	ENSPVAP00000008564	KH RNA binding domain containing, signal transduction associated 1.	Heterogeneous nuclear ribonucleoprotein K.	0.856
KHDRBS1	KHDRBS3	ENSPVAP00000012534	ENSPVAP00000016055	KH RNA binding domain containing, signal transduction associated 1.	KH RNA binding domain containing, signal transduction associated 3.	0.755
KHDRBS1	PTK6	ENSPVAP00000012534	ENSPVAP00000002583	KH RNA binding domain containing, signal transduction associated 1.	Protein tyrosine kinase 6.	0.920
KHDRBS1	SRMS	ENSPVAP00000012534	ENSPVAP00000002585	KH RNA binding domain containing, signal transduction associated 1.	Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites.	0.920
KHDRBS3	FYN	ENSPVAP00000016055	ENSPVAP00000011288	KH RNA binding domain containing, signal transduction associated 3.	FYN proto-oncogene, Src family tyrosine kinase.	0.741
KHDRBS3	HNRNPK	ENSPVAP00000016055	ENSPVAP00000008564	KH RNA binding domain containing, signal transduction associated 3.	Heterogeneous nuclear ribonucleoprotein K.	0.709
KHDRBS3	KHDRBS1	ENSPVAP00000016055	ENSPVAP00000012534	KH RNA binding domain containing, signal transduction associated 3.	KH RNA binding domain containing, signal transduction associated 1.	0.755
KHDRBS3	LRRC7	ENSPVAP00000016055	ENSPVAP00000011229	KH RNA binding domain containing, signal transduction associated 3.	Leucine rich repeat containing 7.	0.770
KHDRBS3	METTL21C	ENSPVAP00000016055	ENSPVAP00000016337	KH RNA binding domain containing, signal transduction associated 3.	Methyltransferase like 21C.	0.722
KHDRBS3	NSRP1	ENSPVAP00000016055	ENSPVAP00000008752	KH RNA binding domain containing, signal transduction associated 3.	Nuclear speckle splicing regulatory protein 1.	0.776
KHDRBS3	PTK6	ENSPVAP00000016055	ENSPVAP00000002583	KH RNA binding domain containing, signal transduction associated 3.	Protein tyrosine kinase 6.	0.741
KHDRBS3	RPRD2	ENSPVAP00000016055	ENSPVAP00000012715	KH RNA binding domain containing, signal transduction associated 3.	Regulation of nuclear pre-mRNA domain containing 2.	0.694
KHDRBS3	SRMS	ENSPVAP00000016055	ENSPVAP00000002585	KH RNA binding domain containing, signal transduction associated 3.	Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites.	0.741
KHDRBS3	YBX3	ENSPVAP00000016055	ENSPVAP00000006361	KH RNA binding domain containing, signal transduction associated 3.	Y-box binding protein 3.	0.758