STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PYM1PYM homolog 1, exon junction complex associated factor. (204 aa)    
Predicted Functional Partners:
RBM8A
RNA binding motif protein 8A.
    
 0.999
MAGOHB
Mago homolog B, exon junction complex subunit.
    
 
 0.918
MAGOH
Mago homolog, exon junction complex subunit.
    
 
 0.918
ENSPVAP00000011272
annotation not available
   
    0.818
AAR2
AAR2 splicing factor.
   
  
 0.793
EIF4A3
Eukaryotic translation initiation factor 4A3.
    
 
 0.690
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
    
 
 0.676
PEX6
Peroxisomal biogenesis factor 6.
      
 0.567
RTN4IP1
Reticulon 4 interacting protein 1.
    
   0.557
ST6GALNAC2
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2.
   
  
 0.554
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.