STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK30915.1ABC-type proline/glycine betaine transport systems, permease component; Gene_1002; identified by MetaGeneAnnotator; putative. (505 aa)    
Predicted Functional Partners:
proW
ABC-ATPase subunit interface; ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]; COG2113; COG: COG4176; Pfam: PF00528,PF04069; InterPro: IPR007210; Substrate binding domain of ABC-type glycine betaine transport system; pfam04069; Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and..; cd06261; conserved gate region; dimer inte [...]
 
 
0.971
proV
ABC-type proline/glycine betaine transport system, ATPase component; ABC superfamily ATP binding cassette transporter, ABC protein [Weissella paramesenteroides ATCC 33313]; ABC transporter signature motif; ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]; COG4175; ATP binding site [chemical binding]; COG: COG4175; Pfam: PF00005,PF00571; InterPro: IPR005892; D-loop; H-loop/switch region; Q-loop/lid; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently fou [...]
 
 0.931
potA
Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.900
GAK30914.1
Putative glutathione reductase; Gene_1001; identified by MetaGeneAnnotator; putative.
     
 0.852
GAK31764.1
Cystathionine beta-synthase; FOG: CBS domain [General function prediction only]; Pfam: PF00571; InterPro: IPR000644; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called..; cd02205; cystathionine beta-synthase (CBS) domain protein [Weissella paramesenteroides ATCC 33313]; gene_1851; identified by MetaGeneAnnotator; putative.
    
  0.847
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the P-Pant transferase superfamily. AcpS family.
     
 0.813
GAK31494.1
Xre family transcriptional regulator; Gene_1581; identified by MetaGeneAnnotator; putative.
    
  0.808
GAK30916.1
Transcriptional regulator; Toxic component of a type II toxin-antitoxin (TA) system.
       0.773
GAK31451.1
Glutamine ABC transporter permease protein; ABC-ATPase subunit interface; ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; COG4215; Bacterial extracellular solute-binding proteins, family 3; pfam00497; Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic..; cd00134; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic c [...]
     
 0.682
adhE
Bifunctional acetaldehyde-CoA/alcoholdehydrogenase; C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD); cd08178; COG1012 NAD-dependent aldehyde dehydrogenases; Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like; cd07122; bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Weissella koreensis KACC 15510]; bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional; gene_1022; identified by MetaGeneAnnotator; putative; metal binding site [ion binding]; putative active site [activ [...]
  
  
 0.663
Your Current Organism:
Weissella oryzae
NCBI taxonomy Id: 1329250
Other names: W. oryzae SG25, Weissella oryzae SG25, Weissella sp. SG25
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