STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A167QJ41Uncharacterized protein. (958 aa)    
Predicted Functional Partners:
A0A167QPY6
TFIID-18kDa-domain-containing protein.
    
 
 0.591
A0A167GBT9
Uncharacterized protein.
    
 
 0.585
A0A167NT10
Transcription factor TAFII-31.
   
   0.575
A0A167MPU0
SGF29 C-terminal domain-containing protein.
    
 
 0.571
A0A167S9B4
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 
 0.554
A0A167QMW6
FAT-domain-containing protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.552
A0A167IHF1
TAF-domain-containing protein.
    
 
 0.534
A0A167HZS9
Uncharacterized protein.
   
 
 0.527
A0A167LET9
Uncharacterized protein.
    
 
 0.527
TRM8
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
    
 
 0.511
Your Current Organism:
Calocera viscosa
NCBI taxonomy Id: 1330018
Other names: C. viscosa TUFC12733, Calocera viscosa TUFC12733
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