STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI96768.1UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)    
Predicted Functional Partners:
AKI97658.1
Galactose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.970
AKI97869.1
Galactose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.970
AKI97647.1
Galactokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GHMP kinase family. GalK subfamily.
  
 
 0.889
AKI96767.1
Recombinase RarA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.791
AKI96769.1
uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.729
AKI97447.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.565
ribA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
   
 
 0.526
AKI96635.1
dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
0.525
glmS
Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
  
 0.508
AKI98026.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.501
Your Current Organism:
Kosmotoga pacifica
NCBI taxonomy Id: 1330330
Other names: DSM 26965, JCM 19180, K. pacifica, Kosmotoga sp. SLHLJ1, MCCC 1A00641, UBOCC 3254, strain SLHLJ1
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