STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI96949.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)    
Predicted Functional Partners:
AKI96947.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.781
AKI98223.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.772
AKI96944.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.772
AKI96945.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.772
AKI96943.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
AKI96946.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
AKI96948.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.590
AKI96950.1
Elongation factor G; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.585
AKI96951.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
Your Current Organism:
Kosmotoga pacifica
NCBI taxonomy Id: 1330330
Other names: DSM 26965, JCM 19180, K. pacifica, Kosmotoga sp. SLHLJ1, MCCC 1A00641, UBOCC 3254, strain SLHLJ1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.