STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98101.1Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)    
Predicted Functional Partners:
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
   
   0.806
AKI98103.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.765
AKI96486.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.763
AKI98102.1
Membrane protease regulatory membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.745
rnfG
Electron transporter RnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
     0.738
AKI98104.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.734
AKI97011.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.733
AKI97439.1
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.707
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
  
 0.695
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.642
Your Current Organism:
Kosmotoga pacifica
NCBI taxonomy Id: 1330330
Other names: DSM 26965, JCM 19180, K. pacifica, Kosmotoga sp. SLHLJ1, MCCC 1A00641, UBOCC 3254, strain SLHLJ1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.