STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98138.12-amino-4-ketopentanoate thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)    
Predicted Functional Partners:
AKI98136.1
Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.951
AKI98137.1
2-amino-4-ketopentanoate thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.951
AKI98139.1
Ornithine aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.951
AKI98368.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.951
AKI96820.1
DNA mismatch repair protein MutL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.784
AKI96998.1
Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.716
AKI97146.1
Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.716
AKI97372.1
Methionine gamma-lyase; Catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.676
AKI98369.1
ExsB family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.521
AKI98367.1
Aminotransferase class IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.503
Your Current Organism:
Kosmotoga pacifica
NCBI taxonomy Id: 1330330
Other names: DSM 26965, JCM 19180, K. pacifica, Kosmotoga sp. SLHLJ1, MCCC 1A00641, UBOCC 3254, strain SLHLJ1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.