STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGN79648.1Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)    
Predicted Functional Partners:
AGN78650.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.875
AGN82095.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 
 0.843
AGN79649.1
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.839
AGN79647.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.808
rnt
Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
      
 0.671
AGN77366.1
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.644
AGN77795.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.644
AGN83146.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.644
AGN78841.1
Chemotaxis protein CheR; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
  
 0.612
AGN82990.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.580
Your Current Organism:
Pseudomonas putida H8234
NCBI taxonomy Id: 1331671
Other names: P. putida H8234
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.