STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKC25484.1LOG family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family. (194 aa)    
Predicted Functional Partners:
KKC25483.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.567
KKC26107.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
KKC26040.1
Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
KKC25485.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.454
amn
AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.
   
 
 0.410
KKC26789.1
N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.410
tadA
CMP deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
    
  0.408
KKC25093.1
Ribonucleotide-diphosphate reductase subunit beta; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
  
    0.406
Your Current Organism:
Sphingomonas sp. SRS2
NCBI taxonomy Id: 133190
Other names: S. sp. SRS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.