Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
L336_0202 | L336_0365 | L336_0202 | L336_0365 | Ham1 family protein. | Hypothetical protein; No homology to any previously reported sequences. | 0.904 |
L336_0202 | L336_0458 | L336_0202 | L336_0458 | Ham1 family protein. | Hypothetical protein; No homology to any previously reported sequences. | 0.901 |
L336_0202 | L336_0668 | L336_0202 | L336_0668 | Ham1 family protein. | Putative Nucleoside diphosphate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.920 |
L336_0202 | apt | L336_0202 | L336_0459 | Ham1 family protein. | Putative Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.915 |
L336_0202 | gmk | L336_0202 | L336_0009 | Ham1 family protein. | Guanylate kinase; Function of strongly homologous gene; enzyme. | 0.912 |
L336_0202 | pyk | L336_0202 | L336_0276 | Ham1 family protein. | Pyruvate kinase; Function of strongly homologous gene; enzyme; Belongs to the pyruvate kinase family. | 0.910 |
L336_0202 | relA | L336_0202 | L336_0094 | Ham1 family protein. | (P)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.903 |
L336_0365 | L336_0202 | L336_0365 | L336_0202 | Hypothetical protein; No homology to any previously reported sequences. | Ham1 family protein. | 0.904 |
L336_0365 | L336_0458 | L336_0365 | L336_0458 | Hypothetical protein; No homology to any previously reported sequences. | Hypothetical protein; No homology to any previously reported sequences. | 0.900 |
L336_0365 | apt | L336_0365 | L336_0459 | Hypothetical protein; No homology to any previously reported sequences. | Putative Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.900 |
L336_0365 | gmk | L336_0365 | L336_0009 | Hypothetical protein; No homology to any previously reported sequences. | Guanylate kinase; Function of strongly homologous gene; enzyme. | 0.904 |
L336_0458 | L336_0202 | L336_0458 | L336_0202 | Hypothetical protein; No homology to any previously reported sequences. | Ham1 family protein. | 0.901 |
L336_0458 | L336_0365 | L336_0458 | L336_0365 | Hypothetical protein; No homology to any previously reported sequences. | Hypothetical protein; No homology to any previously reported sequences. | 0.900 |
L336_0458 | apt | L336_0458 | L336_0459 | Hypothetical protein; No homology to any previously reported sequences. | Putative Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.977 |
L336_0458 | gmk | L336_0458 | L336_0009 | Hypothetical protein; No homology to any previously reported sequences. | Guanylate kinase; Function of strongly homologous gene; enzyme. | 0.900 |
L336_0668 | L336_0202 | L336_0668 | L336_0202 | Putative Nucleoside diphosphate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Ham1 family protein. | 0.920 |
L336_0668 | fusA | L336_0668 | L336_0011 | Putative Nucleoside diphosphate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.638 |
L336_0668 | gmk | L336_0668 | L336_0009 | Putative Nucleoside diphosphate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Guanylate kinase; Function of strongly homologous gene; enzyme. | 0.918 |
L336_0668 | nrdA | L336_0668 | L336_0571 | Putative Nucleoside diphosphate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.920 |
L336_0668 | nrdB | L336_0668 | L336_0573 | Putative Nucleoside diphosphate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Putative ribonucleoside-diphosphate reductase beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. | 0.918 |
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