STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L336_0010Hypothetical protein; No homology to any previously reported sequences. (348 aa)    
Predicted Functional Partners:
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
  
    0.726
gmk
Guanylate kinase; Function of strongly homologous gene; enzyme.
     
 0.655
polA
DNA polymerase I; Function of strongly homologous gene; enzyme.
     
 0.557
L336_0012
Hypothetical protein; No homology to any previously reported sequences.
       0.470
L336_0013
Hypothetical protein; No homology to any previously reported sequences.
       0.453
rnhB
Putative Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the UPF0102 family.
  
    0.438
L336_0395
Membrane protein of unknown function; No homology to any previously reported sequences.
 
    0.412
L336_0213
Putative Peptidase U61 LD-carboxypeptidase A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.411
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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