STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytsJNADP-dependent malic enzyme; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (377 aa)    
Predicted Functional Partners:
pyk
Pyruvate kinase; Function of strongly homologous gene; enzyme; Belongs to the pyruvate kinase family.
  
 0.951
L336_0460
Putative Arylformamidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
  0.801
alaS
Alanine--tRNA ligase; Function of strongly homologous gene; enzyme.
  
    0.554
L336_0062
Hypothetical protein; No homology to any previously reported sequences.
       0.540
L336_0063
Hypothetical protein; No homology to any previously reported sequences.
       0.540
gnd
6-phosphogluconate dehydrogenase, decarboxylating; Function of strongly homologous gene; enzyme.
     
 0.458
sucC
succinyl-CoA synthetase (beta subunit); Function of strongly homologous gene; enzyme.
  
  
 0.418
L336_0375
Putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.407
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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