STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaEDNA polymerase III alpha subunit; Function of strongly homologous gene; enzyme. (1228 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III (beta subunit); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation o [...]
    
 0.999
L336_0617
Hypothetical protein; No homology to any previously reported sequences.
  
 0.999
L336_0641
Putative Single-stranded DNA-binding protein 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
 0.999
dnaX
DNA polymerase III (gamma and tau subunits); DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
 0.997
L336_0986
Hypothetical protein; No homology to any previously reported sequences.
  
 0.997
polA
DNA polymerase I; Function of strongly homologous gene; enzyme.
  
 
 0.916
L336_0069
Hypothetical protein; No homology to any previously reported sequences.
       0.651
L336_0070
Exported protein of unknown function; No homology to any previously reported sequences.
       0.645
L336_0071
Exported protein of unknown function; No homology to any previously reported sequences.
       0.638
L336_0362
Putative DNA-directed DNA polymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.608
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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