STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeRibulose-phosphate 3-epimerase; Function of strongly homologous gene; putative enzyme. (214 aa)    
Predicted Functional Partners:
tktB
Transketolase N-terminal domain protein; Function of strongly homologous gene; enzyme.
 
 
 0.987
rpiB
Ribose 5-phosphate isomerase B; Function of strongly homologous gene; enzyme.
  
 
 0.984
tktA
Transketolase C-terminal domain protein; Function of strongly homologous gene; putative enzyme.
  
 
 0.983
gnd
6-phosphogluconate dehydrogenase, decarboxylating; Function of strongly homologous gene; enzyme.
  
 
 0.956
L336_0088
Exported protein of unknown function; No homology to any previously reported sequences.
       0.773
L336_0084
Putative Ribokinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.681
L336_0083
Putative Ribokinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.679
L336_0086
Hypothetical protein; No homology to any previously reported sequences.
 
    0.672
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
 
 0.631
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.605
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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