STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L336_0106Hypothetical protein; No homology to any previously reported sequences. (178 aa)    
Predicted Functional Partners:
L336_0105
Hypothetical protein; No homology to any previously reported sequences.
  
    0.751
L336_0104
ABC transporter-related protein.
       0.544
L336_0109
Putative Alpha/beta fold family hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.434
L336_0111
Hypothetical protein; No homology to any previously reported sequences.
  
    0.429
L336_0110
Putative blasticidin-S deaminase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.423
L336_0114
Membrane protein of unknown function; No homology to any previously reported sequences; Belongs to the MIP/aquaporin (TC 1.A.8) family.
     
 0.410
L336_0107
Hypothetical protein; No homology to any previously reported sequences.
       0.409
pheT
Phenylalanine--tRNA ligase beta subunit; Function of strongly homologous gene; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.404
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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