STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L336_0110Putative blasticidin-S deaminase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (154 aa)    
Predicted Functional Partners:
tdk
Thymidine kinase; Function of strongly homologous gene; enzyme.
    
 0.928
L336_0365
Hypothetical protein; No homology to any previously reported sequences.
 
  
  0.913
L336_0458
Hypothetical protein; No homology to any previously reported sequences.
    
  0.900
pheT
Phenylalanine--tRNA ligase beta subunit; Function of strongly homologous gene; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.830
pheS
Phenylalanine--tRNA ligase alpha subunit; Function of strongly homologous gene; enzyme; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
       0.790
L336_0107
Hypothetical protein; No homology to any previously reported sequences.
       0.777
L336_0109
Putative Alpha/beta fold family hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.774
L336_0111
Hypothetical protein; No homology to any previously reported sequences.
       0.763
L336_0113
Hypothetical protein; No homology to any previously reported sequences.
       0.704
glyQS
Glycine--tRNA ligase.
  
    0.562
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.