STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L336_0203ABC transporter permease. (247 aa)    
Predicted Functional Partners:
L336_0204
Antibiotic resistance ABC transporter, efflux system, ATP-binding protein.
  
 0.985
L336_0202
Ham1 family protein.
       0.775
L336_0205
Hypothetical protein; No homology to any previously reported sequences.
       0.709
L336_0379
Putative ABC-2 type transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 
0.448
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.446
L336_0207
Homologs of previously reported genes of unknown function.
       0.436
htpX
Membrane protease; Function of strongly homologous gene; enzyme; Belongs to the peptidase M48B family.
       0.436
L336_0209
Homologs of previously reported genes of unknown function.
       0.413
tagG
Teichoic acid precursors permease; Function of strongly homologous gene; transporter.
    
  0.406
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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