STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L336_0245Putative ABC transporter ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (589 aa)    
Predicted Functional Partners:
L336_0192
Putative ABC transporter related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 
0.804
L336_0204
Antibiotic resistance ABC transporter, efflux system, ATP-binding protein.
 
0.619
L336_0246
Putative NUDIX hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.613
nodI
Nodulation ATP-binding protein I.
 
0.594
L336_0244
Homologs of previously reported genes of unknown function; Belongs to the UPF0176 family.
       0.455
L336_0243
Homologs of previously reported genes of unknown function.
       0.445
dnaK
Molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.441
L336_0728
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.415
sodA
Superoxide dismutase [Mn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.406
L336_0241
Putative thioredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the thioredoxin family.
   
 0.404
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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