STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L336_0262Cysteine desulfurase family protein. (384 aa)    
Predicted Functional Partners:
mnmA
tRNA 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
  
 0.860
L336_0265
Putative Uncharacterized deoxyribonuclease YabD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.800
metG
methionyl-tRNA synthetase; Function of strongly homologous gene; enzyme.
       0.794
L336_0261
Exported protein of unknown function; No homology to any previously reported sequences.
       0.782
L336_0263
Hypothetical protein; No homology to any previously reported sequences.
       0.775
L336_0264
Hypothetical protein; No homology to any previously reported sequences.
       0.773
alaS
Alanine--tRNA ligase; Function of strongly homologous gene; enzyme.
  
    0.730
L336_0267
Putative General secretion pathway protein GspG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
       0.565
L336_0258
Actin-like ATPase involved in cell division-like protein.
 
    0.505
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
   0.502
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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