STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykoGTwo-component response regulator [YkoH]; Function of homologous gene experimentally demonstrated in an other organism; regulator. (241 aa)    
Predicted Functional Partners:
L336_0403
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.985
L336_0971
Putative Multi-sensor signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.864
L336_0283
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.848
L336_0859
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.842
L336_0839
Putative PAS/PAC sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
 0.826
L336_0405
Hypothetical protein; No homology to any previously reported sequences.
       0.773
L336_0782
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.599
L336_0406
Hypothetical protein; No homology to any previously reported sequences.
       0.547
L336_0407
Exported protein of unknown function; No homology to any previously reported sequences.
       0.547
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Function of strongly homologous gene; enzyme.
  
  
 0.408
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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