STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atpHATP synthase subunit delta; Function of strongly homologous gene; enzyme. (161 aa)    
Predicted Functional Partners:
atpA
ATP synthase subunit alpha; Function of strongly homologous gene; enzyme.
    
  0.976
atpG
ATP synthase gamma chain; Function of strongly homologous gene; cell process.
    
  0.976
atpD
ATP synthase subunit beta; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.976
atpC
ATP synthase epsilon chain; Function of strongly homologous gene; enzyme.
    
  0.976
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
     
  0.900
atpH-2
ATP synthase subunit delta; Function of strongly homologous gene; enzyme.
     
  0.900
L336_0413
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.773
L336_0414
Hypothetical protein; No homology to any previously reported sequences.
       0.773
L336_0412
Hypothetical protein; No homology to any previously reported sequences.
       0.562
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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