STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L336_0647Exported protein of unknown function; No homology to any previously reported sequences. (518 aa)    
Predicted Functional Partners:
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.465
L336_0643
Hypothetical protein; No homology to any previously reported sequences.
       0.465
L336_0644
Diaminopimelate decarboxylase.
       0.465
efp
Putative Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.465
L336_0646
Putative rRNA methyltransferase YqxC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.465
L336_0641
Putative Single-stranded DNA-binding protein 1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.452
L336_0648
Hypothetical protein; No homology to any previously reported sequences.
       0.452
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.436
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.