STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recOHypothetical protein; Involved in DNA repair and RecF pathway recombination. (224 aa)    
Predicted Functional Partners:
recR
DNA repair and recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
 
 0.999
polA
DNA polymerase I; Function of strongly homologous gene; enzyme.
     
 0.900
L336_0782
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.787
L336_0783
Hypothetical protein; No homology to any previously reported sequences.
       0.774
L336_0777
Membrane protein of unknown function; No homology to any previously reported sequences.
 
     0.682
xseA
Putative Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
     
 0.673
glyQS
Glycine--tRNA ligase.
     
 0.659
L336_0786
Hypothetical protein; No homology to any previously reported sequences.
       0.630
L336_0781
Exported protein of unknown function; No homology to any previously reported sequences.
       0.608
L336_0780
Hypothetical protein; No homology to any previously reported sequences.
  
    0.597
Your Current Organism:
Saccharimonas aalborgensis
NCBI taxonomy Id: 1332188
Other names: C. Saccharimonas aalborgensis, Candidatus Saccharimonas aalborgensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.