STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps1930S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)    
Predicted Functional Partners:
rps12
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).
   
 
 0.974
rps18
30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family.
   
 0.968
W1P5V2_AMBTC
Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.
   
 0.963
U5CRN3_AMBTC
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 0.958
U5DD99_AMBTC
MRP-S28 domain-containing protein.
   
 0.955
rpl16
50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.
  
 
 0.950
rpl2-A
50S ribosomal protein L2, chloroplastic.
  
 
 0.949
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
 
 0.946
W1NRR0_AMBTC
Uncharacterized protein.
   
 
 0.944
W1NIG1_AMBTC
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.943
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.