STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5CVQ6_AMBTCMalate dehydrogenase. (354 aa)    
Predicted Functional Partners:
W1PNH3_AMBTC
Citrate synthase.
  
 0.984
W1P313_AMBTC
Uncharacterized protein.
  
 0.980
W1NRX6_AMBTC
Aspartate aminotransferase.
   
 0.978
W1NVA1_AMBTC
Aspartate aminotransferase.
   
 0.976
W1NVN1_AMBTC
Citrate synthase; Belongs to the citrate synthase family.
  
 0.974
W1PRK6_AMBTC
Aspartate aminotransferase.
   
 0.974
W1PYP5_AMBTC
Citrate synthase; Belongs to the citrate synthase family.
  
 0.974
W1PZY1_AMBTC
Malate synthase; Belongs to the malate synthase family.
   
 0.970
U5D173_AMBTC
Malic enzyme.
  
 0.969
W1NZT7_AMBTC
Ligase_CoA domain-containing protein.
  
 0.967
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.