STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5CVT7_AMBTCHelicase ATP-binding domain-containing protein. (370 aa)    
Predicted Functional Partners:
W1NL04_AMBTC
Uncharacterized protein.
  
 
 0.938
W1PY31_AMBTC
Aminotran_1_2 domain-containing protein.
  
 
 0.938
W1Q126_AMBTC
PRA-CH domain-containing protein.
  
 
 0.938
W1P7Y8_AMBTC
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
  
 
 0.937
U5DBQ7_AMBTC
Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.
  
 
 0.934
W1NEC7_AMBTC
Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family.
  
 
 0.878
W1NL41_AMBTC
Uncharacterized protein.
  
 
 0.878
U5CT44_AMBTC
Macro domain-containing protein.
  
 
 0.778
W1Q0C6_AMBTC
BHLH domain-containing protein.
  
 
 0.778
W1P9H5_AMBTC
PARP-type domain-containing protein.
  
 
 0.728
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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