STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5CXE6_AMBTCUSP domain-containing protein; Belongs to the peptidase C19 family. (364 aa)    
Predicted Functional Partners:
U5D0U4_AMBTC
WD_REPEATS_REGION domain-containing protein.
    
 0.965
U5D2U6_AMBTC
Uncharacterized protein.
    
 0.965
U5D622_AMBTC
WD_REPEATS_REGION domain-containing protein.
    
 0.964
W1PYJ4_AMBTC
XS domain-containing protein.
    
 0.964
W1NRN9_AMBTC
Ubiquitin-like domain-containing protein.
    
 0.901
W1PEZ7_AMBTC
Ubiquitin-like domain-containing protein.
    
 0.901
W1P3M7_AMBTC
Uncharacterized protein.
   
 0.892
W1NVE2_AMBTC
Uncharacterized protein.
    
 0.863
W1P1S3_AMBTC
Tify domain-containing protein.
    
 0.863
W1NI89_AMBTC
Ubiquitin-like domain-containing protein.
    
 0.852
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.