STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D0G4_AMBTCAlpha-carbonic anhydrase domain-containing protein. (55 aa)    
Predicted Functional Partners:
W1PKX8_AMBTC
Brix domain-containing protein.
   
 
 0.565
U5DCK1_AMBTC
Ribosomal_L18_c domain-containing protein.
    
 
 0.549
W1PKI6_AMBTC
Brix domain-containing protein.
   
    0.510
W1P6I7_AMBTC
PUM-HD domain-containing protein.
   
    0.495
U5CYR4_AMBTC
Uncharacterized protein.
   
    0.493
W1P9H6_AMBTC
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
   0.466
U5DAZ9_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
    0.408
U5D4R3_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
  
 0.405
U5DC24_AMBTC
Uncharacterized protein.
   
  
 0.405
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.