STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D150_AMBTCUncharacterized protein. (741 aa)    
Predicted Functional Partners:
W1NLP2_AMBTC
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
  
 0.995
U5CWB0_AMBTC
Uncharacterized protein.
  
  
 0.985
W1P9W0_AMBTC
Uncharacterized protein.
  
  
 0.767
U5CZP0_AMBTC
GHMP_kinases_N domain-containing protein.
 
   
 0.754
W1NS08_AMBTC
Uncharacterized protein.
  
   
 0.739
W1P9L6_AMBTC
Uncharacterized protein.
     
 0.702
U5DG63_AMBTC
Uncharacterized protein.
  
 
 0.671
W1NVQ2_AMBTC
Uncharacterized protein.
  
 
 0.671
W1P6R9_AMBTC
Uncharacterized protein.
  
 
 0.671
W1PVG3_AMBTC
Uncharacterized protein.
  
 
 0.671
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.