STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D1X6_AMBTCUncharacterized protein. (638 aa)    
Predicted Functional Partners:
W1NSN3_AMBTC
Uncharacterized protein.
    
 
 0.580
W1PP24_AMBTC
MIF4G domain-containing protein.
    
 0.509
U5DG00_AMBTC
Uncharacterized protein.
   
 
  0.474
W1PN04_AMBTC
Uncharacterized protein.
    
 
 0.474
U5D4P8_AMBTC
Uncharacterized protein.
   
 
  0.473
W1PYG0_AMBTC
Uncharacterized protein.
   
  
 0.473
U5CY16_AMBTC
Uncharacterized protein.
   
  0.469
W1NUM1_AMBTC
RPOL9 domain-containing protein.
    
  0.467
U5CZT5_AMBTC
RPOLD domain-containing protein.
   
 
 0.461
W1PIP9_AMBTC
Uncharacterized protein.
      
 0.451
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.