STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D209_AMBTCProtein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family. (532 aa)    
Predicted Functional Partners:
U5CZ49_AMBTC
Glyco_trans_4-like_N domain-containing protein.
   
  
 0.688
W1PAV0_AMBTC
Uncharacterized protein.
   
 
 0.605
W1NET5_AMBTC
Uncharacterized protein.
      
 0.532
W1PYR4_AMBTC
LMWPc domain-containing protein.
      
 0.482
W1NRX8_AMBTC
GP-PDE domain-containing protein.
      
 0.461
W1NQX0_AMBTC
Uncharacterized protein.
      
 0.452
W1PWL3_AMBTC
Glyco_tran_28_C domain-containing protein.
      
 0.452
U5CY12_AMBTC
Plus3 domain-containing protein.
      
 0.451
W1PQM4_AMBTC
Uncharacterized protein.
      
 0.451
W1NI90_AMBTC
Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.
      
 0.433
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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