STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D2I8_AMBTCUncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (1061 aa)    
Predicted Functional Partners:
W1Q0F4_AMBTC
PRKCSH-like domain-containing protein.
   
 0.960
W1PFE7_AMBTC
Uncharacterized protein.
    
 0.889
U5DHL9_AMBTC
Uncharacterized protein.
   
 
 0.692
W1PJ72_AMBTC
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.
   
  
 0.637
W1NLR4_AMBTC
Uncharacterized protein.
    
 
 0.617
W1NRY2_AMBTC
Uncharacterized protein.
    
 0.605
W1PQM4_AMBTC
Uncharacterized protein.
   
 0.572
rps12
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).
    
   0.523
rps19
30S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
   0.523
U5CRN3_AMBTC
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
   0.523
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (30%) [HD]