STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D3D8_AMBTCOBG-type G domain-containing protein. (812 aa)    
Predicted Functional Partners:
W1PUX9_AMBTC
Uncharacterized protein.
  
 
 0.899
W1PJ72_AMBTC
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.
  
 
 0.883
U5CTW9_AMBTC
Uncharacterized protein.
  
 
 0.810
W1PPU8_AMBTC
Uncharacterized protein.
  
 
 0.810
rpl20
50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.803
W1PQS9_AMBTC
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.803
U5D9Q3_AMBTC
Uncharacterized protein.
  
 
 0.756
U5DDA4_AMBTC
Uncharacterized protein.
  
 
 0.748
W1P9M2_AMBTC
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.743
W1PES1_AMBTC
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.743
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.