STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D3G8_AMBTCHIT domain-containing protein. (139 aa)    
Predicted Functional Partners:
W1PNE8_AMBTC
Uncharacterized protein.
    
 0.542
W1NPL8_AMBTC
NADPH:adrenodoxin oxidoreductase, mitochondrial.
   
 
 0.539
U5D2U5_AMBTC
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.531
U5D4U5_AMBTC
Uncharacterized protein.
    
 0.510
W1P1C4_AMBTC
WAT1-related protein.
    
 0.510
U5D4P8_AMBTC
Uncharacterized protein.
   
 
  0.492
W1P3D7_AMBTC
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
  0.477
W1PD43_AMBTC
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
      
 0.463
W1PDB9_AMBTC
ATP-synt_ab_N domain-containing protein.
      
 0.463
U5DAP4_AMBTC
PPR_long domain-containing protein.
    
 0.451
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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