STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D3Y8_AMBTCCW-type domain-containing protein. (1728 aa)    
Predicted Functional Partners:
W1NJW8_AMBTC
Uncharacterized protein.
  
 
  0.552
U5DB54_AMBTC
Uncharacterized protein.
  
 
 0.537
U5DES5_AMBTC
Uncharacterized protein.
    
 0.494
W1NE85_AMBTC
Serine/threonine-protein phosphatase.
    
 0.494
W1PKR0_AMBTC
Uncharacterized protein.
    
 0.494
W1PEI2_AMBTC
Tudor domain-containing protein.
  
     0.490
W1PLX2_AMBTC
Uncharacterized protein.
  
     0.488
W1PFR1_AMBTC
Uncharacterized protein.
  
 
  0.477
W1PUC4_AMBTC
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.465
W1PVW2_AMBTC
Uncharacterized protein.
   
 0.465
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.