STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D697_AMBTCAP2/ERF domain-containing protein. (493 aa)    
Predicted Functional Partners:
W1Q0C6_AMBTC
BHLH domain-containing protein.
      
 0.760
U5CT44_AMBTC
Macro domain-containing protein.
      
 0.575
W1NY08_AMBTC
Uncharacterized protein.
      
 0.451
W1NHG5_AMBTC
C2H2-type domain-containing protein.
      
 0.443
U5CXZ0_AMBTC
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
      
 0.440
W1PYZ7_AMBTC
LRRNT_2 domain-containing protein.
      
 0.437
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.