STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D7B5_AMBTCAlpha-mannosidase. (921 aa)    
Predicted Functional Partners:
U5D4N5_AMBTC
Uncharacterized protein.
     
 0.946
U5D5L3_AMBTC
Uncharacterized protein.
     
 0.944
W1PDH6_AMBTC
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 
      0.833
U5DD74_AMBTC
Glyco_hydro_38N domain-containing protein.
 
     0.761
W1PLR3_AMBTC
Cytochrome b5 heme-binding domain-containing protein.
   
    0.543
U5DB88_AMBTC
FA_desaturase domain-containing protein.
   
    0.502
U5D7S5_AMBTC
Uncharacterized protein.
    
 
 0.476
W1PIT9_AMBTC
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.474
W1PHK0_AMBTC
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
     
 0.473
W1NH52_AMBTC
Galectin domain-containing protein.
      
 0.463
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.